D/RNA Analysis Tools	Protein Analysis Tools
o UNAFold o Primer 3	o Helical Wheel Draw (U.Ottawa) o Protein Explorer o PSIPRED o SWISS-MODEL o PDB

Genomes	Commonly used tools
o Viral Genomes Resource (NCBI) o Retroviruses (NCBI) o Herpesviruses	o BioEdit o MEGA

Sequence Alignment	Miscellaneous
o Pairwise Alignment via BLAST o Multiple Sequence Alignment o BLAST	o CBS Prediction Servers o BCM o expasy o ABI - On-Line Analysis Tools o Bioinformatik o EMBOSS suite o Sequence Manipulation Site